PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400016838
Common NameLOC102579016
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 335aa    MW: 36334.3 Da    PI: 10.0853
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400016838genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY962.5e-30236294259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                            D+y+WrKYGqK++kgs++pr+YYrC+s  gCp++k+ver+++dp ++++tY geH+h 
  PGSC0003DMP400016838 236 ADEYSWRKYGQKPIKGSPYPRGYYRCSSVrGCPARKHVERATDDPGMLIVTYGGEHRHV 294
                           69*************************988****************************5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105333.6E-16188233IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.7E-32224294IPR003657WRKY domain
PROSITE profilePS5081129.712230293IPR003657WRKY domain
SuperFamilySSF1182906.02E-26231293IPR003657WRKY domain
SMARTSM007741.0E-35235295IPR003657WRKY domain
PfamPF031067.6E-26237293IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MAVDLLNYSN INEQLAIQEA ASAGLKSMDN LIRFVSFQQQ QNQTVQPDCR EITDYTVNNF  60
RKVISILNRT GHARFRRSPV QVTDDSCTAL TLSPLTTPAE EILPAVKAPV IVPVEKYQSK  120
ALTLDFTKRK VGKSMGCEAV PVASSTTSSS FMSTITGEGS VSNGKVFSSM NLPPRPPVSS  180
GKPPIAGKRC RDHDLSDEFS GRTSSSGKCH CKKRKSRVKK VIRVPAISSK TADIPADEYS  240
WRKYGQKPIK GSPYPRGYYR CSSVRGCPAR KHVERATDDP GMLIVTYGGE HRHVQTTISG  300
NVTSAGAGAG SSGERMMAFE LTGQKNGERL GLEI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-21223293271WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0569150.0EU056915.1 Solanum tuberosum WRKY transcription factor 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006357046.10.0PREDICTED: probable WRKY transcription factor 11
SwissprotQ9SV151e-111WRK11_ARATH; Probable WRKY transcription factor 11
TrEMBLM1AKF70.0M1AKF7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000246320.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31452250
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.29e-89WRKY DNA-binding protein 11
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]